BtaEX6076495 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006987 | LASS3
Description
Bos taurus ceramide synthase 3 (CERS3), mRNA. [Source:RefSeq mRNA;Acc:NM_001099389]
Coordinates
chr21:6307582-6321670:+
Coord C1 exon
chr21:6307582-6307700
Coord A exon
chr21:6320878-6320935
Coord C2 exon
chr21:6321620-6321670
Length
58 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTTCTTTTGGCAGCTG
3' ss Score
8.78
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACTGATATTTATGGACTGGCAAAGAAGTGTAACTTGACAGAGCGCCAGGTTGAAAGATGGTTTAGGAGACGGCAGAATCAAGATAGGCCTTGCAGGATGAAGAAATTCCAGGAATCTTG
Seq A exon
CTGGCGATTTACATTTTACCTAATTATTACCATTGCTGGAATTGCATTTCTTTATGAT
Seq C2 exon
AAACCTTGGGTATATGACCTGTGGGAAGTTTGGAAGGGCTATCCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006987-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(61.7=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTAACTTGACAGAGCGCCA
R:
GCCCTTCCAAACTTCCCACAG
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]