DreEX6029564 @ danRer10
Exon Skipping
Gene
ENSDARG00000018619 | cers4b
Description
ceramide synthase 4b [Source:ZFIN;Acc:ZDB-GENE-110719-2]
Coordinates
chr2:56243155-56251136:-
Coord C1 exon
chr2:56251018-56251136
Coord A exon
chr2:56245947-56246004
Coord C2 exon
chr2:56243155-56243205
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCCTCTGTGTTCCTCCTCAGCTG
3' ss Score
9.95
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
ATTGAGATCAGCGGGCTGGTAAAGCAGTGCGGTCTGACTCACAGACAGGTGGAGACTTGGTTTCGAAACCGCAGAAATCTGGACAGACCCAGCAATACAACAAAGTTCTGTGAGGCCTG
Seq A exon
CTGGAGGTTTGCCTTCTACCTGGTGGCCTTCACCGCGGGACTGCTGTCTTTAATTAAC
Seq C2 exon
ACGGCCTGGTTCTGGGATCAGAGAGAGTGCTGGAGAGGGTTTCCTCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018619-'3-6,'3-5,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PD(58.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
A:
PF0379811=TRAM_LAG1_CLN8=FE(16.5=100)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(14.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAAGCAGTGCGGTCTGACT
R:
CCAGCACTCTCTCTGATCCCA
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]