DreEX0002919 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62723482-62725856:-
Coord C1 exon
chr5:62725726-62725856
Coord A exon
chr5:62724558-62724698
Coord C2 exon
chr5:62723482-62723608
Length
141 bp
Sequences
Splice sites
3' ss Seq
GTGTAAATGTCCTGCTGCAGGAG
3' ss Score
6.75
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
ACTGAAGAAAACATTCATCACTATAATGAGGCCAAAAAGAGAATGGAAGAGACAGAACGAGAGCTGGCAGAGATAGAAAAGAGAGCTCAAGACAGTGGAAAACTTCTAGTGCAAAGCAAACAACAGCTGAG
Seq A exon
GAGTCTTCAAGAGGAGGTTATGACGCTGCAGAAAAGGAAAGAGGACAAGGAACGCTCTCTACATGATGCTGAGGAGGTCCTTACATGTCATGATTCAAAGTTTCAAGACGTTAGCAGAAAGCTGGAGAGAGCGAATGACAG
Seq C2 exon
ACTGGAAATTGCCGAGAAGGAGCTCCGAGAGACGCAGAGCATGGAGGTGAAACTGTTGCAGAGCTGCAGAGAGATGGAAAACAGCCTAGCACAGCGCAAAACAAAACTGGATGAAGTCAACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=0.458 C2=0.279
Domain overlap (PFAM):
C1:
PF041569=IncA=PU(17.9=44.4)
A:
PF041569=IncA=FE(42.0=100)
C2:
PF041569=IncA=FE(37.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCATCACTATAATGAGGCCA
R:
CTGAGTGTTGACTTCATCCAGT
Band lengths:
248-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]