GgaEX1016164 @ galGal4
Exon Skipping
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8365939-8366663:+
Coord C1 exon
chr17:8365939-8366069
Coord A exon
chr17:8366201-8366341
Coord C2 exon
chr17:8366537-8366663
Length
141 bp
Sequences
Splice sites
3' ss Seq
GGGCACGACTGCTTCTACAGATC
3' ss Score
3.87
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
ACTAAAGACACTATTCAAAAGTACAATCATGCCAAACAACATTTGTTCCGTACTGAAACTGAGGCAGAGGAGCTAGAGCGAAGGGCTCAGGAAATGGCCACTAAACTTGTGAAAGCAGATCAGCAATTAAG
Seq A exon
ATCATTACAGGCAGATACGCGGGATTTAGAACAGCATAAGAAGGAACAAGAAGGTATTTTGAAGGAAATCAACAAAATGGTGTCTGCAAGAGACTCTGAGTTCCAGTCCTTAAACCAGAAAATAGAAATGCTGACTGAAAG
Seq C2 exon
TCTTCAGAAGCTTCAAGGAGATATTCAAGCTGCAGAAGGTAATGAAGAACATCACCTCCAAATGCTCAGAGAAGTGGAGGACATTCTTCAGGTCAAGAAAACTGAACAGGAGAGACTGAAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513-'45-39,'45-37,46-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.396 C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAAAGTACAATCATGCCAAACA
R:
TGATTTTTCAGTCTCTCCTGTTCAGT
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]