MmuEX0010885 @ mm10
Exon Skipping
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35160248-35162093:+
Coord C1 exon
chr2:35160248-35160378
Coord A exon
chr2:35160521-35160661
Coord C2 exon
chr2:35161929-35162093
Length
141 bp
Sequences
Splice sites
3' ss Seq
GGATGAATGCTCCATTGTAGACT
3' ss Score
4.14
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
ACAAAGAGTGCTGTTGAAAAATTCACTGATGCCAAGAGAAATTTATTACAAACCGAGTCAGACGCTGAGGCACTAGAAAAGAGAGCCCAGGAGACTGCACTTAACCTTGTGAAAGCAGAGCAGCAGCTAAG
Seq A exon
ACTGCTCCAGGCTGATGCAGAGGACTTGGAGCAGCACAAAATCAAACAAGAAGAAATCTTGAAAGAAATAAACAAAGTTGTAGCAGCCAAAGATGCCGATTTCCAGTGTCTAAACGAGAAGAAGGAAAAACTGACAGAAGA
Seq C2 exon
GTGACAAGCCAGCAGCAGGAGTTGGCTGTCCTGGACTCAGAGTTGGGGCATAGAAGGGAGGAGCTGCTTCTACTCCAGGACAGCCTCGCCCAGGCAAAAGCTGACCTCCAGGAAGCCCTGACACTGGGGGAGACGGAAGTTGCTGAGAAGTGCAGTCACATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110_MULTIEX3-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.008 C2=0.005
Domain overlap (PFAM):
C1:
NO
A:
PF041027=SlyX=WD(100=97.9)
C2:
PF041027=SlyX=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAACCGAGTCAGACGCTGAG
R:
TGTGACTGCACTTCTCAGCAA
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types