HsaEX0014674 @ hg38
Exon Skipping
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121157470-121158109:+
Coord C1 exon
chr9:121157470-121157600
Coord A exon
chr9:121157740-121157880
Coord C2 exon
chr9:121157983-121158109
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATAAAGCAATGTGCTTTAGATC
3' ss Score
1.74
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ACAAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGAAGTTTATTGCAAACTGAGTCAGATGCTGAGGAATTAGAAAGGAGAGCTCAGGAAACTGCTGTTAACCTCGTCAAAGCTGATCAGCAGCTAAG
Seq A exon
ATCGCTCCAGGCTGATGCAAAGGATTTGGAGCAGCACAAAATCAAGCAAGAAGAAATCTTGAAAGAAATAAACAAAATTGTAGCAGCAAAAGACTCAGACTTCCAATGTTTAAGCAAGAAGAAGGAAAAACTGACAGAAGA
Seq C2 exon
GCTTCAGAAACTACAGAAAGACATAGAGATGGCAGAACGCAATGAGGATCACCACCTGCAGGTCCTTAAAGAATCTGAGGTGCTTCTTCAGGCCAAAAGAGCCGAGCTGGAAAAGCTGAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-'58-68,'58-64,59-68
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=0.080 C2=0.347
Domain overlap (PFAM):
C1:
NO
A:
PF041027=SlyX=PU(70.8=95.8),PF079267=TPR_MLP1_2=PU(16.8=41.7)
C2:
PF041027=SlyX=PD(27.7=41.9),PF079267=TPR_MLP1_2=FE(35.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGAAAAGTTCACTGATGC
R:
CTGGCTTTTCAGCTTTTCCAG
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development