HsaINT0033504 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121157740-121158109:+
Coord C1 exon
chr9:121157740-121157880
Coord A exon
chr9:121157881-121157982
Coord C2 exon
chr9:121157983-121158109
Length
102 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
3' ss Seq
GTGTTGCTGGTGCTTTGTAGGCT
3' ss Score
7.54
Exon sequences
Seq C1 exon
ATCGCTCCAGGCTGATGCAAAGGATTTGGAGCAGCACAAAATCAAGCAAGAAGAAATCTTGAAAGAAATAAACAAAATTGTAGCAGCAAAAGACTCAGACTTCCAATGTTTAAGCAAGAAGAAGGAAAAACTGACAGAAGA
Seq A exon
GTAAGTAAGGCCTCTGTAGGGCTACAAGGGGTTTGTGCTGGAAGACAGCTCTGGGGTTCCGAGTCCCTTAGGATCTGCTCTAGTGTTGCTGGTGCTTTGTAG
Seq C2 exon
GCTTCAGAAACTACAGAAAGACATAGAGATGGCAGAACGCAATGAGGATCACCACCTGCAGGTCCTTAAAGAATCTGAGGTGCTTCTTCAGGCCAAAAGAGCCGAGCTGGAAAAGCTGAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=NA C2=0.347
Domain overlap (PFAM):
C1:
PF041027=SlyX=PU(70.8=95.8),PF079267=TPR_MLP1_2=PU(16.8=41.7)
A:
NA
C2:
PF041027=SlyX=PD(27.7=41.9),PF079267=TPR_MLP1_2=FE(35.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAAGGATTTGGAGCAGCA
R:
GCTTTTCCAGCTCGGCTCTTT
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development