RnoINT0038569 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14353704-14354086:+
Coord C1 exon
chr3:14353704-14353844
Coord A exon
chr3:14353845-14353959
Coord C2 exon
chr3:14353960-14354086
Length
115 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
AATCCTGCCCTGCCATGTAGGCT
3' ss Score
6.76
Exon sequences
Seq C1 exon
ATTGCTCCAGGCTGATGCAGAAGACTTGGAGCAACACAAAATCAAACAAGAAGAAATCTTGAAAGAAATAAACAAAGTTGTAGCAGCCAAAGATGCTGATTTCCAGTGTCTAAACGAGAAGAAGGAAAAACTGACAGAAGA
Seq A exon
GTAAGGCCTTTGAGGGGTATTGGGGAGGGGTGGAATGGGAAGAGTTGTCCTGGAGCAGCTGTGGGCATCCGGCTCCTTTAGAGGAGGGCTGCTGAAATCCTGCCCTGCCATGTAG
Seq C2 exon
GCTTCAAAGTCTGCAGAGAGACATCAAGGCAGCGGAAGTCAATGAGGATCACCACCTTCAGGTTCTTAAGGAATCTGAGAGTCTCCTTCAGGCCAAGAGAGCTGAGCTGGAAACACTGAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGGCTGATGCAGAAGACT
R:
CTCAGCTCTCTTGGCCTGAAG
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]