MmuINT0034551 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35016041-35016437:+
Coord C1 exon
chr2:35016041-35016181
Coord A exon
chr2:35016182-35016310
Coord C2 exon
chr2:35016311-35016437
Length
129 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
AGTCCTGCCCTGCCATGTAGGCT
3' ss Score
6.16
Exon sequences
Seq C1 exon
ACTGCTCCAGGCTGATGCAGAGGACTTGGAGCAGCACAAAATCAAACAAGAAGAAATCTTGAAAGAAATAAACAAAGTTGTAGCAGCCAAAGATGCCGATTTCCAGTGTCTAAACGAGAAGAAGGAAAAACTGACAGAAGA
Seq A exon
GTAAGGCCTTTGAGGGGTAGGGGTGGGGTGGGGTGGGATGGAATAGAATGGGAAGAGAGTGTTCTGGAGCAGCTGTGGGCATCTGGCTCCTCTAGAGGAGGGCTGCTGAAGTCCTGCCCTGCCATGTAG
Seq C2 exon
GCTTCAGAGTCTGCAGAGAGACATCAAGGCAGCGCAACACAGTGAGGATCACCACCTTCAGGTCCTTAGAGAGTCTGAGACTCTCCTTCAGGCCAAGAGAGCTGAGCTGGAAACACTGAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:28
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF041027=SlyX=PU(70.8=95.8)
A:
NA
C2:
PF041027=SlyX=PD(27.7=41.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGCTGATGCAGAGGACTTG
R:
CAGTGTTTCCAGCTCAGCTCT
Band lengths:
252-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: