GgaINT0126676 @ galGal3
Intron Retention
Description
NA
Coordinates
chr17:9070456-9070864:+
Coord C1 exon
chr17:9070456-9070542
Coord A exon
chr17:9070543-9070737
Coord C2 exon
chr17:9070738-9070864
Length
195 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCTTTTATCTTCTCTGTAAGTCT
3' ss Score
4.46
Exon sequences
Seq C1 exon
TATTTTGAAGGAAATCAACAAAATGGTGTCTGCAAGAGACTCTGATTTCCAGTCCTTAAACCAGAAAATAGAAATGCTGACTGAAAG
Seq A exon
GTAAATCTATCTTTCAATTTGCCTTAAACTGGTGTTCTCTAATAAGTATGCCCAACGTACTTACCTGTGCACATCCCTGTTCACTGTGGAGGAGTTGGACTGGATGACCTTTAAGAGTCCCTTCCAACTCTAAGGATTCTATGATTCTATGTATTCTTGTTTCTTCTGAACCATGCCTTTTATCTTCTCTGTAAG
Seq C2 exon
TCTTCAGAAGCTTCAAGGAGATATTCAAGCTGCAGAAGGTAATGAAGAACATCACCTCCAAATGCTCAGAGAAGTGGAGGACATTCTTCAGGTCAAGAAAACTGAACAGGAGAGACTGAAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.093
Domain overlap (PFAM):
C1:
PF047288=LPP=PU(50.0=76.7)
A:
NA
C2:
PF047288=LPP=PD(47.8=51.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGGAAATCAACAAAATGGTGT
R:
CTGATTTTTCAGTCTCTCCTGTTCA
Band lengths:
210-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]