GgaINT0126676 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8366201-8366663:+
Coord C1 exon
chr17:8366201-8366341
Coord A exon
chr17:8366342-8366536
Coord C2 exon
chr17:8366537-8366663
Length
195 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
CCTTTTATCTTCTCTGTAAGTCT
3' ss Score
4.46
Exon sequences
Seq C1 exon
ATCATTACAGGCAGATACGCGGGATTTAGAACAGCATAAGAAGGAACAAGAAGGTATTTTGAAGGAAATCAACAAAATGGTGTCTGCAAGAGACTCTGAGTTCCAGTCCTTAAACCAGAAAATAGAAATGCTGACTGAAAG
Seq A exon
GTAAATCTATCTTTCAATTTGCCTTAAACTGGTGTTCTCTAATAAGTATGCCCAACGTACTTACCTGTGCACATCCCTGTTCACTGTGGAGGAGTTGGACTGGATGACCTTTAAGAGTCCCTTCCAACTCTAAGGATTCTATGATTCTATGTATTCTTGTTTCTTCTGAACCATGCCTTTTATCTTCTCTGTAAG
Seq C2 exon
TCTTCAGAAGCTTCAAGGAGATATTCAAGCTGCAGAAGGTAATGAAGAACATCACCTCCAAATGCTCAGAGAAGTGGAGGACATTCTTCAGGTCAAGAAAACTGAACAGGAGAGACTGAAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.396 A=NA C2=0.419
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTACAGGCAGATACGCGGG
R:
TCCTGTTCAGTTTTCTTGACCTGA
Band lengths:
250-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]