RnoEX6016585 @ rn6
Exon Skipping
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14353239-14354086:+
Coord C1 exon
chr3:14353239-14353369
Coord A exon
chr3:14353704-14353844
Coord C2 exon
chr3:14353960-14354086
Length
141 bp
Sequences
Splice sites
3' ss Seq
GCATGAATGCTCTATTGTAGATT
3' ss Score
6.23
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
ACAAAGAGTGCTGTCGAAAAGTTCACTGATGCCAAGAGAAATTTATTACAAACTGAGTCAGACGCTGAGGCATTAGAAAAGAGAGCCCAGGAGACTGCACTTAACCTTGTGAAAGCAGAGCAGCAACTAAG
Seq A exon
ATTGCTCCAGGCTGATGCAGAAGACTTGGAGCAACACAAAATCAAACAAGAAGAAATCTTGAAAGAAATAAACAAAGTTGTAGCAGCCAAAGATGCTGATTTCCAGTGTCTAAACGAGAAGAAGGAAAAACTGACAGAAGA
Seq C2 exon
GCTTCAAAGTCTGCAGAGAGACATCAAGGCAGCGGAAGTCAATGAGGATCACCACCTTCAGGTTCTTAAGGAATCTGAGAGTCTCCTTCAGGCCAAGAGAGCTGAGCTGGAAACACTGAAAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015-'39-57,'39-56,40-57=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=0.000 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCTGTCGAAAAGTTCACTGA
R:
CAGTGTTTCCAGCTCAGCTCT
Band lengths:
243-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]