HsaEX0014674 @ hg19
Exon Skipping
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123919748-123921297:+
Coord C1 exon
chr9:123919748-123919878
Coord A exon
chr9:123920018-123920158
Coord C2 exon
chr9:123921133-123921297
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATAAAGCAATGTGCTTTAGATC
3' ss Score
1.74
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ACAAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGAAGTTTATTGCAAACTGAGTCAGATGCTGAGGAATTAGAAAGGAGAGCTCAGGAAACTGCTGTTAACCTCGTCAAAGCTGATCAGCAGCTAAG
Seq A exon
ATCGCTCCAGGCTGATGCAAAGGATTTGGAGCAGCACAAAATCAAGCAAGAAGAAATCTTGAAAGAAATAAACAAAATTGTAGCAGCAAAAGACTCAGACTTCCAATGTTTAAGCAAGAAGAAGGAAAAACTGACAGAAGA
Seq C2 exon
GTGACAAGTCAGCAGCAGGAGATGGCTGTCTTGGACAGGCAGTTAGGGCATAAAAAGGAGGAGCTGCATCTACTCCAAGGAAGCATGGTCCAGGCAAAAGCTGACCTCCAGGAAGCTCTGAGACTGGGAGAGACTGAAGTAACTGAGAAGTGCAATCACATTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397_MULTIEX7-1/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.063 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
PF041027=SlyX=PU(70.8=95.8),PF079267=TPR_MLP1_2=PU(16.8=41.7)
C2:
PF079267=TPR_MLP1_2=PD(60.8=87.3),PF140101=PEPcase_2=PU(47.2=90.9)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGAAAAGTTCACTGATGC
R:
GTCTCAGAGCTTCCTGGAGGT
Band lengths:
247-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)