DreEX6014112 @ danRer10
Exon Skipping
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62750277-62753330:-
Coord C1 exon
chr5:62753141-62753330
Coord A exon
chr5:62752792-62752901
Coord C2 exon
chr5:62750277-62750471
Length
110 bp
Sequences
Splice sites
3' ss Seq
TATTTTGGTTTTACTTTCAGCTG
3' ss Score
8.68
5' ss Seq
CGGGTGAGA
5' ss Score
7.62
Exon sequences
Seq C1 exon
GAGGTGGAGGTAGACAACCTAATAAGTGAGAGTCCGTACATTGGAAAGTCTCGTCAGAAAAGAAACATCAAATTCCCATCAGAGACTGAGAATACTGGCACACAAGGCCAGCAGAAGCATCCGCCAGCCTCAGACCTGACAGAGACCGATAGCCCAGGAGATTACATGTCCAGACATGCCCAGCTCGCAG
Seq A exon
CTGAAATGAAATTACAGCAGTTACATAAAGAAATTGAGGCAAGAGAGCAGCAGATCCTTACAGCCAGTGAAGAGCTTCGGCAGCTAGAGGATGCAGTTTCCCAGAGACGG
Seq C2 exon
ATCAGTGAGGCTGAGAAGGAGCAGCTCAGACAGGAGCTTCAGAGGAGGATACAGAATCTTGGAGAGCTGAGAGGAGAGATGGAGGCTGTGGAGAAACAGCTGGACAGGCTGAATGCTGAGAGGAATCAAGCTCAGGATGAAATGGAGCAGCTGCAGAATCTGCTGCACAGCCTGGATCCCAGTGACCCCAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.919 C2=1.000
Domain overlap (PFAM):
C1:
PF101864=Atg14=PU(30.7=71.9),PF041569=IncA=PU(12.5=21.9)
A:
PF101864=Atg14=FE(24.0=100),PF041569=IncA=FE(32.1=100)
C2:
PF101864=Atg14=FE(42.7=100),PF041569=IncA=PD(53.6=92.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATACTGGCACACAAGGCCA
R:
GCAGCTGCTCCATTTCATCCT
Band lengths:
255-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]