BtaEX6036303 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112476679-112477316:+
Coord C1 exon
chr8:112476679-112476809
Coord A exon
chr8:112476947-112477087
Coord C2 exon
chr8:112477190-112477316
Length
141 bp
Sequences
Splice sites
3' ss Seq
AATAAAGCGATGTGTTTCAGATT
3' ss Score
3.19
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ACGAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGGAATTTGTTGCAAACTGAGAAAGATGCTGAGGAGTTAGAAAGGAGAGCTCAGGAAACAGCTGTTAGCCTTGTCAAGGCTGATCAGCAGCTCAG
Seq A exon
ATTGTTGCAGGCGGACACAAAGGATTTGGAGCAGCACAGAACCGAGCAAGAAGAAATCTTGAAAGAGATAAACAAAGTTGTTGCAGCAAAAGACTCAGACTTCCAGTGTTTAAACACGAAGAAGGAAAAACTAACAGAAGA
Seq C2 exon
GCTGCAGAAGCTGCAGAAAGACATCGAGACGGCAGTGCGCACTGAGGATCACCACCTGCAGGTCCTGAGAGAGTCGGAGGCCCTCCTGCAGGCCAAGAGAGCGGAGCTGGACAAGCTGAGGAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417-'35-45,'35-43,36-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.432 A=0.208 C2=0.209
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGTTGAAAAGTTCACTGATGC
R:
CTGGCTCCTCAGCTTGTCCAG
Band lengths:
250-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]