HsaINT0033503 @ hg19
Intron Retention
Gene
ENSG00000119397 | CEP110
Description
centriolin [Source:HGNC Symbol;Acc:1858]
Coordinates
chr9:123919748-123920158:+
Coord C1 exon
chr9:123919748-123919878
Coord A exon
chr9:123919879-123920017
Coord C2 exon
chr9:123920018-123920158
Length
139 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AATAAAGCAATGTGCTTTAGATC
3' ss Score
1.74
Exon sequences
Seq C1 exon
ACAAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGAAGTTTATTGCAAACTGAGTCAGATGCTGAGGAATTAGAAAGGAGAGCTCAGGAAACTGCTGTTAACCTCGTCAAAGCTGATCAGCAGCTAAG
Seq A exon
GTAGGTGGATTCCCTAAGCCGTTGATGTATACATTGAGATGAATGAAAAGTTTGCTTCTAAGGGGATAATAATTGGTTTATGATAAATAATGCATGGTAAGTCTACAGGACCTGGGGGGAATAAAGCAATGTGCTTTAG
Seq C2 exon
ATCGCTCCAGGCTGATGCAAAGGATTTGGAGCAGCACAAAATCAAGCAAGAAGAAATCTTGAAAGAAATAAACAAAATTGTAGCAGCAAAAGACTCAGACTTCCAATGTTTAAGCAAGAAGAAGGAAAAACTGACAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397-CEP110:NM_007018:26
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=NA C2=0.063
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041027=SlyX=PU(70.8=95.8),PF079267=TPR_MLP1_2=PU(16.8=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCACTGATGCCAAGAGAAGT
R:
TGTCAGTTTTTCCTTCTTCTTGCT
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)