DreINT0007161 @ danRer10
Intron Retention
Gene
ENSDARG00000088492 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr5:62724558-62725856:-
Coord C1 exon
chr5:62725726-62725856
Coord A exon
chr5:62724699-62725725
Coord C2 exon
chr5:62724558-62724698
Length
1027 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
GTGTAAATGTCCTGCTGCAGGAG
3' ss Score
6.75
Exon sequences
Seq C1 exon
ACTGAAGAAAACATTCATCACTATAATGAGGCCAAAAAGAGAATGGAAGAGACAGAACGAGAGCTGGCAGAGATAGAAAAGAGAGCTCAAGACAGTGGAAAACTTCTAGTGCAAAGCAAACAACAGCTGAG
Seq A exon
GTAAACAATACCACCTACCACACTAACATAGGCTCATTCTGGAAATGTAGCCCTATGTACATTTCTGGAGATGGGGAATTATGTAGCCAGAGGTATTTATGTCTGCATTTCGTCTTGAAAACTAATGGTACGGGGTGGTATGATGCCACTTCTTTCCGTGATCACCAACTGACTGCTTACCTCTGTATCGATGGCTTTACCGCTGTTATCAGTTTGTCCAGTGGCTCGCCGAATACATTGGCGGACTTGTGCTGTTAAGCAGAGTTGATCCCAATGATAGGGTTTGAGTCCGGCAAAGAACGGTTCCAGAAAACAGGTAAGACAAAAACAGAAGCAAAAAAATAAGGGGAAGGCGGTGGGGAGGTCAACCTGTGCTTTTAAAAACACTATTGGTTGGGTTTAGGGAAGGAGGAGGATGAATGGCACTCTCGAGAGAAATTTAAGATCTCAAAATGCGTACAAATAGGCCTCTGGTGGATTCATAAAAGCAAAAACCTCCTTGGATGTATTTGGCGCTCTCTAGAAATGTATATAGGGGTGCATTTTCAGTATGAGCCTGAGTTAAACCACACATTCAAAAATCTCATTTCCATTCTAAATTCTTATGAAAGTGGCTGTTTTTAAGTAGTTAAAGTGATTTTTTCATCAAAAAATAAAAATGTACTCACTATTTACTCTCTCTCGAGTGGTTCCAAAGAATTTCTTTTTTCTGTTGAACATGAAAGAATATATTTTGAAGAAAGCTGAAAACCTGTAACCATTGACTTTTATTGCAGGAAAAACAATTACAATGAAAGTCAATGGTTACAGGTTTCGAGCTTTGTTTAAAATATCTTTTTTACTTTAATAGAAAAAAAGAAACTCATAAATATTTACAAAAAGTAAAGGGTGAGTAAATGATGACAGAATTTTCCGTTTTGGGTGAACTATCCCTTTAACTGCTGCATGATGACACAATCTAAAAGTCTTCTGCTGAAAAAAACAAATCTAATAGCAACATTGAGGATGTGTAAATGTCCTGCTGCAG
Seq C2 exon
GAGTCTTCAAGAGGAGGTTATGACGCTGCAGAAAAGGAAAGAGGACAAGGAACGCTCTCTACATGATGCTGAGGAGGTCCTTACATGTCATGATTCAAAGTTTCAAGACGTTAGCAGAAAGCTGGAGAGAGCGAATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000088492:ENSDART00000131064:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.617 A=NA C2=0.458
Domain overlap (PFAM):
C1:
PF041569=IncA=PU(17.9=44.4)
A:
NA
C2:
PF041569=IncA=FE(42.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTCATCACTATAATGAGGCCA
R:
CTGTCATTCGCTCTCTCCAGC
Band lengths:
262-1289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]