RnoINT0038568 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14353239-14353844:+
Coord C1 exon
chr3:14353239-14353369
Coord A exon
chr3:14353370-14353703
Coord C2 exon
chr3:14353704-14353844
Length
334 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
GCATGAATGCTCTATTGTAGATT
3' ss Score
6.23
Exon sequences
Seq C1 exon
ACAAAGAGTGCTGTCGAAAAGTTCACTGATGCCAAGAGAAATTTATTACAAACTGAGTCAGACGCTGAGGCATTAGAAAAGAGAGCCCAGGAGACTGCACTTAACCTTGTGAAAGCAGAGCAGCAACTAAG
Seq A exon
GTGGGTGGAGCCCTGGCCTCTGATGTGGGTGGAGCCTGGTCCTCTGAGGTGGGTGGAGCCCAGGCCTCAGAGGTGGGTGGAGCCTGGTCCTCTGAAGTGGGTGGAGCCTGGCCTCTGAGGTGGGTGGAGCCTGGTCCTCTGAGGTGGGTGGAGCCTGGCCTCTGAGGTGGGTGGAGCCTGGTCCTCTGGTGGGTGGGGCCTGGTCCTCTGAGGTGGGTGGAGCCTGGTCCTCTGGTGGGTGGGGCCCAGGCTCCACCTGAAGGCTGAGGCACTCAGGGAAATGGCCCTTCCATGCTATGCCCTAAGGGCCAGAGGCATGAATGCTCTATTGTAG
Seq C2 exon
ATTGCTCCAGGCTGATGCAGAAGACTTGGAGCAACACAAAATCAAACAAGAAGAAATCTTGAAAGAAATAAACAAAGTTGTAGCAGCCAAAGATGCTGATTTCCAGTGTCTAAACGAGAAGAAGGAAAAACTGACAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.205 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAAGAGTGCTGTCGAAAAGT
R:
TTCTGTCAGTTTTTCCTTCTTCTCGT
Band lengths:
270-604
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]