HsaINT0033503 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121157470-121157880:+
Coord C1 exon
chr9:121157470-121157600
Coord A exon
chr9:121157601-121157739
Coord C2 exon
chr9:121157740-121157880
Length
139 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
AATAAAGCAATGTGCTTTAGATC
3' ss Score
1.74
Exon sequences
Seq C1 exon
ACAAAAAATGCTGTTGAAAAGTTCACTGATGCCAAGAGAAGTTTATTGCAAACTGAGTCAGATGCTGAGGAATTAGAAAGGAGAGCTCAGGAAACTGCTGTTAACCTCGTCAAAGCTGATCAGCAGCTAAG
Seq A exon
GTAGGTGGATTCCCTAAGCCGTTGATGTATACATTGAGATGAATGAAAAGTTTGCTTCTAAGGGGATAATAATTGGTTTATGATAAATAATGCATGGTAAGTCTACAGGACCTGGGGGGAATAAAGCAATGTGCTTTAG
Seq C2 exon
ATCGCTCCAGGCTGATGCAAAGGATTTGGAGCAGCACAAAATCAAGCAAGAAGAAATCTTGAAAGAAATAAACAAAATTGTAGCAGCAAAAGACTCAGACTTCCAATGTTTAAGCAAGAAGAAGGAAAAACTGACAGAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.298 A=NA C2=0.080
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF041027=SlyX=PU(70.8=95.8),PF079267=TPR_MLP1_2=PU(16.8=41.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCACTGATGCCAAGAGAAGT
R:
TGTCAGTTTTTCCTTCTTCTTGCT
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development