GgaINT1009812 @ galGal4
Intron Retention
Gene
ENSGALG00000001513 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr17:8365939-8366341:+
Coord C1 exon
chr17:8365939-8366069
Coord A exon
chr17:8366070-8366200
Coord C2 exon
chr17:8366201-8366341
Length
131 bp
Sequences
Splice sites
5' ss Seq
AAGGTACGC
5' ss Score
10.4
3' ss Seq
GGGCACGACTGCTTCTACAGATC
3' ss Score
3.87
Exon sequences
Seq C1 exon
ACTAAAGACACTATTCAAAAGTACAATCATGCCAAACAACATTTGTTCCGTACTGAAACTGAGGCAGAGGAGCTAGAGCGAAGGGCTCAGGAAATGGCCACTAAACTTGTGAAAGCAGATCAGCAATTAAG
Seq A exon
GTACGCTACTCTTGTGAATTAGTATCAAATGGGGAAGAGGAAAACAAGATTGTTTTGAATATTGAGCTACTGCTTTTGGAGTGGGGAAGCTGTTAAAATGTTAATATGTAAGGGCACGACTGCTTCTACAG
Seq C2 exon
ATCATTACAGGCAGATACGCGGGATTTAGAACAGCATAAGAAGGAACAAGAAGGTATTTTGAAGGAAATCAACAAAATGGTGTCTGCAAGAGACTCTGAGTTCCAGTCCTTAAACCAGAAAATAGAAATGCTGACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001513:ENSGALT00000002299:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=0.396
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTATTCAAAAGTACAATCATGCCA
R:
TCTGGTTTAAGGACTGGAACTCA
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]