DreEX0003052 @ danRer10
Exon Skipping
Gene
ENSDARG00000101281 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr23:44159964-44166337:+
Coord C1 exon
chr23:44159964-44160071
Coord A exon
chr23:44162517-44162627
Coord C2 exon
chr23:44166215-44166337
Length
111 bp
Sequences
Splice sites
3' ss Seq
TATGTTTTGCTGTGCTGCAGTGT
3' ss Score
7.51
5' ss Seq
GCTGTGAGA
5' ss Score
1.65
Exon sequences
Seq C1 exon
CTTGTGCAGACACTCAGCATTTGTGTGGCACCGGCCGCTGCATTAATTCCGATCTTCTCTGCGACGGCTACGATGACTGTGGTGATCTGAGCGATGAGCAAAACTGTG
Seq A exon
TGTGTGATGAGCTTGAAGAGCACCACTGTGGGGATGGACGCTGTATTCCTCGAGAGTGGCTCTGTGACGGAGATCATGACTGTCTGGACAAGAGCGACGAGCTCAACTGCT
Seq C2 exon
CGTGTAAGTCCCAGGGTTTAGTGGAGTGTAAGAACAAGCAGTGTATTCCCAGTGCCTTTCGATGCGATGGTGAAGATGACTGTAAAGATGGCAGCGATGAAGAGAACTGCACACAGCAGCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101281_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=88.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACACTCAGCATTTGTGT
R:
GTGTGCAGTTCTCTTCATCGC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]