RnoEX6042314 @ rn6
Exon Skipping
Gene
ENSRNOG00000002302 | Corin
Description
corin, serine peptidase [Source:RGD Symbol;Acc:727887]
Coordinates
chr14:38413673-38417989:+
Coord C1 exon
chr14:38413673-38413780
Coord A exon
chr14:38415845-38415955
Coord C2 exon
chr14:38417873-38417989
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGATATATCCTTTTCTCCAGATT
3' ss Score
8.72
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACTGCAGCGAGGATCTGTTTCACTGTGGAACAGGCAAGTGCCTCCACCACAGCCTTGTGTGCGATGGGTATGATGACTGTGGGGACCTGAGCGACGAGCAAAACTGTG
Seq A exon
ATTGCAATCTCACAAAAGAGCATCGCTGTGGAGACGGGCGCTGCATCGCGGCTGAGTGGGTGTGTGATGGGGACCATGACTGTGTGGACAAGTCTGACGAGGTCAACTGCT
Seq C2 exon
CTTGTCCCAGCCAGGGCCTTGTGGAATGCAGAAGTGGACAGTGCATCCCTAGCACCTTCCAGTGTGATGGGGACGAAGACTGTAAGGACGGGAGTGACGAGGAGAACTGCAGTGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002302-'18-11,'18-10,19-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.4)
C2:
PF0005713=Ldl_recept_a=WD(100=90.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCGAGGATCTGTTTCAC
R:
CACTGCAGTTCTCCTCGTCAC
Band lengths:
220-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]