HsaEX0016850 @ hg38
Exon Skipping
Gene
ENSG00000145244 | CORIN
Description
corin, serine peptidase [Source:HGNC Symbol;Acc:HGNC:19012]
Coordinates
chr4:47677938-47683838:-
Coord C1 exon
chr4:47683731-47683838
Coord A exon
chr4:47680141-47680251
Coord C2 exon
chr4:47677938-47678054
Length
111 bp
Sequences
Splice sites
3' ss Seq
GTGAGTTTTCATTTCTCCAGATT
3' ss Score
7.45
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACTGCAGCGAGAATCTGTTTCACTGTCACACAGGCAAGTGCCTTAATTACAGCCTTGTGTGTGATGGATATGATGACTGTGGGGATTTGAGTGATGAGCAAAACTGTG
Seq A exon
ATTGCAATCCCACAACAGAGCATCGCTGCGGGGACGGGCGCTGCATCGCCATGGAGTGGGTGTGTGATGGTGACCACGACTGTGTGGATAAGTCTGACGAGGTCAACTGCT
Seq C2 exon
CCTGTCACAGCCAGGGTCTGGTGGAATGCAGAAATGGACAATGTATCCCCAGCACGTTTCAATGTGATGGTGACGAGGACTGCAAGGATGGGAGTGATGAGGAGAACTGCAGCGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000145244_MULTIEX1-4/9=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCGAGAATCTGTTTCACT
R:
GACGCTGCAGTTCTCCTCATC
Band lengths:
222-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development