MmuEX6018021 @ mm9
Exon Skipping
Gene
ENSMUSG00000005220 | Corin
Description
corin [Source:MGI Symbol;Acc:MGI:1349451]
Coordinates
chr5:72748115-72751997:-
Coord C1 exon
chr5:72751890-72751997
Coord A exon
chr5:72749613-72749723
Coord C2 exon
chr5:72748115-72748231
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTCCTTTTCTCCAGATT
3' ss Score
10.56
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
ACTGCAGCAAGGATCTGTTTCACTGTGGCACAGGCAAGTGCCTCCATTACAGCCTCTTGTGTGATGGGTACGATGACTGTGGGGACCTGAGTGACGAGCAAAACTGTG
Seq A exon
ATTGTAATCTCACAAAAGAGCATCGCTGTGGAGATGGGCGCTGCATTGCGGCTGAGTGGGTGTGCGATGGGGACCATGACTGTGTGGACAAGTCTGATGAGGTCAACTGCT
Seq C2 exon
CTTGTCACAGCCAGGGCCTGGTGGAATGCAGAAGTGGACAGTGCATCCCTAGCACCTTCCAGTGTGATGGGGACGAAGACTGTAAGGATGGGAGTGACGAGGAGAACTGCAGTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005220-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005713=Ldl_recept_a=WD(100=97.3),PF0005713=Ldl_recept_a=PU(0.1=0.0)
A:
PF0005713=Ldl_recept_a=WD(100=97.4),PF0005713=Ldl_recept_a=PU(0.1=0.0)
C2:
PF0005713=Ldl_recept_a=WD(100=92.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGCAAGGATCTGTTTCACT
R:
CACTGCAGTTCTCCTCGTCAC
Band lengths:
220-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: