DreEX0003171 @ danRer10
Exon Skipping
Gene
ENSDARG00000009026 | CR388002.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F4G7]
Coordinates
chr1:13432237-13433933:+
Coord C1 exon
chr1:13432237-13432337
Coord A exon
chr1:13432645-13432680
Coord C2 exon
chr1:13433709-13433933
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTGTCCGTCTTTTAGCCA
3' ss Score
8.68
5' ss Seq
CAGGTGATC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GTGTCTGCATTTCGAGAGCATGAGAAGGACTCGTATCGACTGAGCTGGGGTGCTGAACATCTGGATAATGTGGTGCTAACCAGCACTCTTCTGCAGTCAGG
Seq A exon
CCAGTCTACCCCATGCCTTGACCATGACAACAGCAG
Seq C2 exon
CTTCCTGGTCAGTTTTATGGTGGATGCTCGTGGTGGAGCCATGCGTGGCTGTCGTCACAATGGACTACGCATTATTGTTCCACCTAGAAAGTGTTCAGCTCCTACACGAGTCACGTGTCGCCTGGTGAAGAGGCACAGACTGGCCTCTATGCCCCCAATGGTGGAAGGAGAGGGGCTTGCTGGCAAAATCATTGAAGTTGGTCCCACCGGAGCACAGTTTCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000009026_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.079
Domain overlap (PFAM):
C1:
NO
A:
PF0079115=ZU5=PU(1.2=7.7)
C2:
PF0079115=ZU5=FE(89.3=100),PF0079115=ZU5=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTGCTGAACATCTGGAT
R:
GCGTAGTCCATTGTGACGACA
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]