DreEX0003453 @ danRer10
Exon Skipping
Gene
ENSDARG00000100088 | CU915738.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9GXL1]
Coordinates
chr15:37128177-37139098:-
Coord C1 exon
chr15:37138918-37139098
Coord A exon
chr15:37130897-37131168
Coord C2 exon
chr15:37128177-37128313
Length
272 bp
Sequences
Splice sites
3' ss Seq
ATTGTGTTTATTGGCAACAGATA
3' ss Score
4.28
5' ss Seq
GAGGTCAGA
5' ss Score
5.24
Exon sequences
Seq C1 exon
ACTGCGGGACTCGGCCATACAAGCATAACCGTATTGTGGGTGGTCAGAACGCAGATGTGGGTGAATGGCCGTGGCAGGTCAGTCTTCATTTCAAGACCCAAGGACACGCTTGCGGAGCCTCGATCATCTCCAACAAATGGCTGTTGTGTGCTGCCCACTGCTTCATCCAACCTGATCCATC
Seq A exon
ATACAAGATGACATCCAGCTGGATTACGTACAGTGGGCTGCGGGACCAGAACACCCATGACAAATCGGTTCAAATGCGAGATTTGAAGACCATCATCACCCACCCAAACTACAACGATTTGACCAATGACTATGATATCTCTCTCCTCGAACTGAGCCAGCCGCTGAACTTCAGCAACACTGTGCATCCCATCTGCCTTCCAGCGACGAGCCACGTCTTCACAGCCGGCAGCTCCTGCTTTGTGACGGGCTGGGGGACGCTTCGAGAGGGAG
Seq C2 exon
GAAGCGCGGCTCAAATCCTTCAGAAAGCAGAAGTAAAGGTGATTAATGATACAGTGTGCAACATGGTGACCGAAGGTCAGGTGACCTCTAGAATGATGTGCAGCGGCTACCTTTCTGGAGGTGTGGATGCTTGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100088-'20-20,'20-19,21-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=PU(21.0=80.3)
A:
PF0008921=Trypsin=FE(39.1=100)
C2:
PF0008921=Trypsin=FE(19.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCCATACAAGCATAACCGT
R:
GCATCCACACCTCCAGAAAGG
Band lengths:
300-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]