DreEX0003637 @ danRer10
Exon Skipping
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27738023-27740583:+
Coord C1 exon
chr5:27738023-27738211
Coord A exon
chr5:27740154-27740300
Coord C2 exon
chr5:27740392-27740583
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATCAATGGTTTACATGCAGGTT
3' ss Score
6.23
5' ss Seq
GAGGTACTG
5' ss Score
7.67
Exon sequences
Seq C1 exon
TTTGAAGGTCAAGAAATCAGTCTGGACAACCGCATTGGGATTTTCATCACAATGAACCCAGGTTATGCCGGCCGCACAGAACTTCCAGAGTCAGTGAAAGCTTTATTCAGACCAGTGGTTGTCATCGTTCCTGACCTGCAGCAGATTTGTGAGATCATGCTCTTCTCTGAAGGCTTCCTTGTGGCTAAG
Seq A exon
GTTTTGGCAAAGAAGATGACAGTGCTGTACAAACTAGCCCGGGAGCAGCTGTCTAAACAGTCACACTACGACTTTGGTCTTAGAGCACTTAAATCTGTGTTAGTAATGGCAGGGGAGCTGAAGAGAGGTTCTCCTAATCTCAGTGAG
Seq C2 exon
GATGTGGTTCTGATGAGAGCTCTTCGAGACATGAACCTACCCAAGTTTGTATTTGAGGATGTTCCTCTGTTTTTGGGCCTCATCTCAGATCTGTTTCCTGGACTCGACTGTCCACGTGTGCGTTATCCCAGCTTCAATGATGCTGTAGAGGCCATCCTGGAGGAAAATAGGTATATCATGATGCCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486-'38-37,'38-36,40-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.8=100)
A:
PF127742=AAA_6=PD(19.0=89.8)
C2:
NO
Main Skipping Isoform:
ENSDART00000087708fB335
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCACAGAACTTCCAGAGTC
R:
TGAAGCTGGGATAACGCACAC
Band lengths:
254-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]