GgaEX6013576 @ galGal3
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4930314-4931637:-
Coord C1 exon
chr15:4931449-4931637
Coord A exon
chr15:4931211-4931357
Coord C2 exon
chr15:4930314-4930505
Length
147 bp
Sequences
Splice sites
3' ss Seq
ATTATTTAACTCTCAAACAGGTC
3' ss Score
8.09
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
Exon sequences
Seq C1 exon
TTTGAAGGACAAGAAATTAACCTTGATAGCCGAATGGGCATTTTTATTACAATGAATCCTGGTTATGCTGGCCGGACTGAACTCCCTGAGTCTGTAAAAGCTTTGTTCAGGCCTGTGGTTGTTATTGTACCAGATCTTCAGCAAATCTGTGAAATCATGCTCTTTTCTGAAGGATTCCTTACAGCAAAG
Seq A exon
GTCCTTGCCAAAAAGATGACAGTGCTATACAAGCTGGCAAAAGAACAACTTTCTAAACAACATCATTATGATTTTGGACTACGGGCCCTTAAATCAGTGTTGGTGATGGCTGGGGAACTGAAAAGAGGATCACCAGACCTCAGTGAG
Seq C2 exon
GAGGTTGTACTGATGAGAGCTCTACGAGATATGAATCTTCCTAAATTTGTGTTTGAAGATGTACCTCTCTTCCTTGGCCTAATCTCTGACCTGTTTCCTGGCCTGGACTGCCCTCGAGTCCGCTACCCTGACTTTAATGATGCTGTAGAACAAGTGCTGGAAGAAGGGGGTTATATTGTTTTACCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'32-33,'32-32,33-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.8=100)
A:
PF127742=AAA_6=PD(19.0=89.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCAGGCCTGTGGTTGTT
R:
CCCCTTCTTCCAGCACTTGTT
Band lengths:
256-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]