HsaEX6069954 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123850888-123857247:+
Coord C1 exon
chr12:123850888-123851076
Coord A exon
chr12:123853206-123853352
Coord C2 exon
chr12:123857056-123857247
Length
147 bp
Sequences
Splice sites
3' ss Seq
TATTATCTTCTATCAAAAAGACT
3' ss Score
1.94
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
Exon sequences
Seq C1 exon
TTTGAAGGGCAGGAGATTTCCCTGGACTCCCGCATGGGCATCTTCATCACCATGAACCCCGGCTACGCAGGCCGCACGGAGCTGCCCGAGTCGGTGAAGGCGCTGTTCAGGCCTGTGGTCGTGATCGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTCTTCTCTGAGGGCTTCCTGGAGGCCAAG
Seq A exon
ACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAG
Seq C2 exon
GACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGTCCTACCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'47-47,'47-45,48-47=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.8=100)
A:
PF127742=AAA_6=PD(19.0=89.8)
C2:
PF0319311=DUF258=PU(30.0=28.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCATCACCATGAACCCCGG
R:
AGTCCAGCCCAGGAAACAGAT
Band lengths:
257-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains