HsaINT1011304 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123853206-123857247:+
Coord C1 exon
chr12:123853206-123853352
Coord A exon
chr12:123853353-123857055
Coord C2 exon
chr12:123857056-123857247
Length
3703 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
ATGTGTTTCATTTCCTGCAGGAC
3' ss Score
11.53
Exon sequences
Seq C1 exon
ACTCTGGCGAAAAAGATGACGGTTCTGTATAAGCTGGCCCGGGAGCAGCTGTCCAAGCAGTATCACTATGATTTTGGACTCAGAGCCCTGAAATCGGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCTCTGACCTTAGGGAG
Seq A exon
GTAGGGGCCACGTGCTGGAACATTCTCTGGTTTCAGCTGCTTCAGGCATTTACTACGTGCCATTGGGGAGGTGATGGGCACAGTATGGTATCACCTGAAAGGTTTAAGTCTTAGCTGCCTCTTCACCCCGCGGTCTGGCCTTACTTTGGCCTCTTACCTGTTGTATCGTTTGCTTGTAATTACACTTAGTACCTTAAGGTCAAGTGCAATGTCTTCGCTCCAATAGCAACATTTATGATGCTTCCATAGTAATAATCTGTAGTCTCAGGATGGGTGTGGCGGAAGGGTGGGGACTAACAAAATTCTCATGAAAGCATGAAGGTGAGTTGTTATTTTCTCTTTGAAACAAAAGAGGGGAACAATTGTGTTTTTTTTACATGGACTTTAAATAAAAGGTTTAGTCAATGTTCTGTGGGCAACAGGCTTACCTGTTTCTCTAGTGACTGTACTCAATGTTGCACGCACACACGCACGCACACACACGCACACGCACGGACACACGCACGCGCACACACACACGGATACATGCACGCGCACACACGTACGCACGCACATGTACACATACGCACACGCACGCACACGCACACGCACACACACACACATTTGGGTAGTAAAAAAAAAACAGCCGTGAGTGCAGTGATAGAAGCCTGTTTGTGTCCATAGGAGGAGAGGCTGCCACAAATCGCTTCATTCTTTTGGGATTTTCACACATTTGGGTTTTTTTTTTTTTTTTTTTTGGAGGGGTCGAAGGAAGAGTTATTTATGCTCTTACAAAAAAGGAAGCTGTAAAATGTAAAACACTATAAAGTCAGATGGAGCTGCATTCGTCATTTGTACTTCTTTTTTCTTAGGAGAAAGGAGTTATATGGAAACTTCTTTCATTTTCTCCCCTGCTCCTCTATGTCCAAAGTTGAAGGGCGATCATGCTATTGAGTGGGTCATATCTTCTGAACTGAAAAACCACCGATGCCACTTTCAGTCTTAGCAACAGGGAAAACAGTCTCAAGTGCTATCTAAGGCTCTACGAAGAAGAGTGAGGCCGTTTGCAGCAGTCTCTCCTCCTAGGGCGGTGAATATGGTCCCATCACTGCACTCACTACTGGCTTGTTTTCTTTTACTGCCTTACACTGAACCCAAGCATGCATTCATAGGCTCAACTGCTGCACAATCTGGTACTTCCTTAGAAGAATGAAAACACATTGCAAATACCGAATATCCAAGGACTTCCGAGAAAGAGGTAAAAAACAGCCTCCTTTTCTAGGAGGAAAATCCCTCTTCTCATCCAGCAATGTGGACTTACACATGTAAAACTGTGTTTGTACAGAGACTGCGATGGTTTCTTCACATAGGAAATTAACTTTGCTGTATTGTCTTTGGGCTTCTTTATCACATTAAAAGTTTGCAAGCTTGGACCTTTGTTCTTATTCAGTAAATCTATGTCACAGGATGAGTGAGGATTTAGCATCTTTTGCTTCAAATTAGAACCACATATTTGGAATTTACTGCTGCAGTTCTCAGCTGCGCTTATCATGACAGTGGTGGAAACTGGAGGACATTAAAAAGCCCATGAAGTCAGCTGTACTTGCCATTTATTTAGTCTTGTTTGGAATAAAAGGTAAAGAATTCACAAATACCACCACCTCAGCACCTGTTTCAAAGGAAACATCAGGCTTCAGCTTGCAACATGATGTCGTTACAATTAAGCAAATAGCAGAAGCCCCCGTCAGTTGCTTCCTTCTTCTGGAGAAGGCGGGGAACTGCAATCCCCGGGGCTCCTGTGTTGAGTCTGGGAGGCAGAACAAAAGGAAAAGTGGCCTTTTCCACTCCACATCCTGGAGGTAATGGGTAGAGAAGACATACCCACATTTCCAGATAGTGAACGCTGAGTAGAGAAGCAGGACTACCTGTCCTAGGAGACAACATAGAGACGCTTGCCAGGTCCTGAGTTCAGAATTTTGTTTTTGAGATTTATATAAAAGCACCTAAGGCTGGGCGCAGTGGCTCATGCCTGTAATCCTAGCACTTTCGGAGGCTGAGGTGGGAGGATTGCTTGAGGCCAGAAGTTTGAGACCAGCCTAGGCAACATGGCAAAACCCCATTTCTTTCCAAACAAATACCCAAAACTAAAAAATTTAGCTGGCTGTGGTGGCACACTTCTATAGTCCCAGCTACTTAGGAGGCTGAAGTAGGAGGATTGCTTGAACCTGGGAGGTGGAGGCTGCAATGAGCCGAGATGGCACTATTACACTCCAGCCTGGGTGACAGAGCGAGACCCTGTCTCAAAAAAAAAAAAAAAATAATAATAAAAAGTATATATATATATATGCGCACCTAAAGGTCAAAGTAAATGTTCTTCCTGTAATAAGGAACCTTTGCTTTAGCGTAGATGGCCATACCCCTCTGTAAGGTGGGGAGGAGGAAGTTTCTGCTCCTTCCCTCTGGCCGAGATCTGTTTTCTTCTCCTTGCACGGCCCACCAGGACACTCAGCCTCCTAGGAGCAGGCCCACCCTGGCCTCACTCCTCTGCCTGTGCTCCTATTTTATATTTTATTTAATTTTTACATTTATATACAATTTTGTATTGTATATTTCACTTTTATATATTTTATTTTACATTTTTATTTTCATATGAAACTTTGAAAAATGCATATTTACATTTATATTATTTATATGATCATTATTAAATATGAAATATGAAATTTCATATATTCATATTACACATAATATCTTATACATATTTTATACTATATAATATACATAACATTTTATATACATTTATAAATTTATATAATTTATAAATAATACAAATATAATTAATTTATATGAATGATATAAAATATATAAATTTTATAAAATTTAATTTATATAAAATTGTAATATATGTATATAATTTATATATAATTTTATATTTCATTTTAAATTTTATATTTCATTTAAATATATATGTATGTGTATATATATGTGTGTGTGTGTGTATATCTATCTATCTATCTATCTTTTTTTCGAGACAGAGTTTCACTCTTGTCACGCCAGGAGTACGATGGCGCAATCTCAGTTCACTGCAACCTCCACCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGCACCTGCCGCCACACCCAGCTAATTTTTGTGTTTTTAGTAGAGATGTGATTTCACCATGTCGGCCAGGCTGATCTCGAACTCCTCAGGTTATCCACCCACCTCAGCCTCCCAAAGTGCTGGAATTACAGGCATGAGCCACTGCACCCGGCCATATATGTGTATATTATATAATATGAAGTACATATTATATGAAATATATGAAATATATATTTTATATTTTATGTTTAATCTCATGTAAACTATTTTATATAATTTATATTTATTTACATATTAATATAAAATAAAAAATAAAATTATATAATTTCTGTATATAAAAATATATAATACATATATTCAGAAATTATATAATTTTAAATTAATTTCTGTAATTTAAATTTAAATTAATTTAAATTAATTTCTGTAATTTAAAATTATGTAATTTTAAATGTGTATAAAATTGTTAAAAATAATAAAATGTTTATATAAAAATTATATTTTATATTTCATAAGAGTGTTACCACTGGGTTGGAAACACAGTCCAAAGCACTGGGTTCCTTTGGAAATCTCTTGGAAACATGTGTTTCATTTCCTGCAG
Seq C2 exon
GACGTGGTGCTGATGAGGGCCTTGCGAGACATGAACTTGCCCAAATTTGTGTTTGAAGATGTTCCTCTTTTCCTTGGTTTGATTTCGGATCTGTTTCCTGGGCTGGACTGCCCTCGCGTCCGCTACCCTGACTTCAACGATGCGGTAGAGCAGGTCCTGGAGGAGAACGGCTACGCGGTCCTACCCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
NA
C2:
PF0319311=DUF258=PU(30.0=28.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains