GgaINT0008943 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4930314-4931357:-
Coord C1 exon
chr15:4931211-4931357
Coord A exon
chr15:4930506-4931210
Coord C2 exon
chr15:4930314-4930505
Length
705 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGAC
5' ss Score
5.41
3' ss Seq
TTCTGCTGTATTTTGTCTAGGAG
3' ss Score
8.12
Exon sequences
Seq C1 exon
GTCCTTGCCAAAAAGATGACAGTGCTATACAAGCTGGCAAAAGAACAACTTTCTAAACAACATCATTATGATTTTGGACTACGGGCCCTTAAATCAGTGTTGGTGATGGCTGGGGAACTGAAAAGAGGATCACCAGACCTCAGTGAG
Seq A exon
GTAGACTTGCCACTTAGTTACCCTTTGCAGCTCATATTTTCATTGGGAATAGTATACGTTTACACACTTGCTGTAGCTTGTCTGCATTTGGAAAAGAAGAATTGGTCTTTTTTGTCTTATTATTTTACTGTGTTCCTATTGAGCTTCATGATGCCCTCTGCCAACAAGATAGCATCAGAACTAGGTAGGGAAACCTATAAAAATGAGGTGTTTTACTTCATGTGTGCTCTTGATATTAAATCCATTATGCACCACTGTTTATCCTGGATAAATGGCAAAAACTACTTTCTGAAGATAATACCCAAAGTGGGTGCTCCATTTGTGCCGTTGTTCATTTTGTAGCTCGAGCAGTATAGTATACTTATAAATGAAAACTTTTCAATGCTGCATTGATTACAGAATTTGGGAATGTTTATAAAACAGTTGGTTATTTTAGCATCCAAGTGGGGAAATTAAAGAATGACCACTCCAGCCATATAGCATTTTGTTAATATAGTTGAAAAGGGCAGCATATTATTCTTAACTATTGGTCAAATTAATCCTTTTAAAATGGCCTCTTTTCCACTAGTAACTGAAGTCAAGAAAGCATTCCCAAAGCTGTACTAAAGTAATTGTGCAATCATTTTTAGAGATATTTGAAATTACTACATATTAGACAATTGGTTAGCTGTTTGGTAGTGATTGATTCTGCTGTATTTTGTCTAG
Seq C2 exon
GAGGTTGTACTGATGAGAGCTCTACGAGATATGAATCTTCCTAAATTTGTGTTTGAAGATGTACCTCTCTTCCTTGGCCTAATCTCTGACCTGTTTCCTGGCCTGGACTGCCCTCGAGTCCGCTACCCTGACTTTAATGATGCTGTAGAACAAGTGCTGGAAGAAGGGGGTTATATTGTTTTACCAGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGCCAAAAAGATGACAGTGC
R:
TGAACTGGTAAAACAATATAACCCCC
Band lengths:
336-1041
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]