BtaINT0050184 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54123869-54125161:-
Coord C1 exon
chr17:54125012-54125161
Coord A exon
chr17:54124061-54125011
Coord C2 exon
chr17:54123869-54124060
Length
951 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGG
5' ss Score
7.81
3' ss Seq
ATGTGTTTCATTCCATGCAGGAT
3' ss Score
9.91
Exon sequences
Seq C1 exon
AAGACTCTGGCCAAAAAGATGACCGTCCTGTATAAGCTGGCCCGGGAGCAGCTCTCCAAGCAACATCATTATGATTTTGGACTCAGAGCCCTGAAATCGGTATTGGTGATGGCTGGTGAGCTGAAGAGAGGCTCTTCTGAGCTTCGGGAG
Seq A exon
GTAGGGGCCATGTGCACTAAGCTCTCTGGGTTTTTATTTGGTTCACGGGTATCAAACGAATGCTGGGATGGAAGTGCCAGGGAGCACAGGTCAATCAAGAAAAAGCTTTCCTTTTTTAAATATAGTTTTATTTGTTTAAGTCTTTCTTTTTTTTTTTTTTTTAAACTTTAGTTTTGGCCGTGCTGGGCTTCATTGCTGTACGGGCTTTTTCTCTAGGCACAGCAAGTGGGGGCTACTCTCTAGTTGCGGTGTTGGGGTTCTCATTGCAGTGGCTTCTTTTCTTGTGGAGCATGCGCCCTAGGGCATGCAGGCTTCAGTAGTTGCGCCTCCCAGGCTCTAGAGCCCAGGCCAATAGTTGTGGCACATAGGTCTAATTGCTCCATGTCAAGTGGGATCCTGGACCAGGAATTGAACCCATGTCTCCTGCATTGGCAGGTGGATTCTTTACCACTGAGCTACCAGGGAAGCCCAAGAAAAAGCTTCATGCTTAGCTGTCACTTCGTTTACCTGGCTGGCCTTCATTTGGTCTCTCCTTCATTATATTGTTTTCTTCTAATCTGACTTATTATTGGCAAGTTCATTGTCTTCACAACACCAATGTTTGTAACACTTCAATGATAATAATCGATCTACAATTGCAGGGTGGTGAGATGGAGGGGTGGGGATGAACAAAATTCTCAAGAAAGCATGAACATGAGTTTTTTTCCTCTTTGCAATAAAAGCCAGAGGAACAGTCATGTTTCTTTCACATGGGGCTTCCTCCAAAACAGAGCTCAATAGATGCTGCTCTGTGGGCAACAGACTCATGTGTTTCTCCAGAAACTCTACTTGCAGTGCTCTATGTTTTATATTTCATGTAAGGTTTCATTGTCTATTTCATAGGACCATTTCTAGACTAGCCCTGGGGTCTTCTGGAAACATCTCTGAAGACATGTGTTTCATTCCATGCAG
Seq C2 exon
GATGTGGTGTTGATGAGGGCCCTTCGAGACATGAACCTGCCCAAGTTTGTGTTTGAAGACGTGCCTCTCTTCCTTGGTTTGATCTCCGACCTGTTCCCTGGACTGGATTGCCCTCGGGTTCGCTACCCTGATTTCAATGATGCTGTGGAACAGGTGCTTCAGGAAAATGGCTACATCATCTTACCTGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.4=90.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTCTGGCCAAAAAGATGACC
R:
CTGGACAGGTAAGATGATGTAGCC
Band lengths:
342-1293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development