DreINT0009117 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27740154-27740561:+
Coord C1 exon
chr5:27740154-27740300
Coord A exon
chr5:27740301-27740391
Coord C2 exon
chr5:27740392-27740561
Length
91 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TTTTTCTTTACACCTACTAGGAT
3' ss Score
6.86
Exon sequences
Seq C1 exon
GTTTTGGCAAAGAAGATGACAGTGCTGTACAAACTAGCCCGGGAGCAGCTGTCTAAACAGTCACACTACGACTTTGGTCTTAGAGCACTTAAATCTGTGTTAGTAATGGCAGGGGAGCTGAAGAGAGGTTCTCCTAATCTCAGTGAG
Seq A exon
GTACTGATCTCCCTGCATCATCCTTTACATTCCTTAATAAATTGCAGCCACAAATTGATCCCTACCTTTTTTTTTTCTTTACACCTACTAG
Seq C2 exon
GATGTGGTTCTGATGAGAGCTCTTCGAGACATGAACCTACCCAAGTTTGTATTTGAGGATGTTCCTCTGTTTTTGGGCCTCATCTCAGATCTGTTTCCTGGACTCGACTGTCCACGTGTGCGTTATCCCAGCTTCAATGATGCTGTAGAGGCCATCCTGGAGGAAAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGGCAGGGGAGCTGAAGA
R:
TGAAGCTGGGATAACGCACAC
Band lengths:
180-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]