MmuINT0050598 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125262638-125264389:+
Coord C1 exon
chr5:125262638-125262784
Coord A exon
chr5:125262785-125264197
Coord C2 exon
chr5:125264198-125264389
Length
1413 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCACCCTCTGGTCCCTCCAGGAT
3' ss Score
9.98
Exon sequences
Seq C1 exon
ACGCTGGCCAAGAAGATGACAGTTCTCTATAAGCTGGCCCGGGAGCAGCTGTCGAAACAGCACCACTATGACTTTGGGCTCCGGGCCCTGAAGTCAGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCGCAGACCTGCAGGAG
Seq A exon
GTAGGCCACTCAGTGTCTTCGGTTTTGCGTGGTTCGGTGCAGTTCCTGTGCATGGGCAGAAGGCATGGCTGCGGACACGGGGCAGAGCAGGCCACCCGGAAGCTCAAGTCTTGGCTATCCCTCCATGAGCTGTTTGCCTTTGCTTTGGTCCCCCCCCCCCCCCCAACGTGGTACCTTCAGAGATGTGTGACTTTAAACTCAGAGTCCTGTGGCAGTGCAAAAATTCAGAGTGCTTCAGCAGCAGCTGTCAGCCTGTCATCGTAAGGTGATAGAATGGCAGAGGGACACTAGGAGCCTTCTAAAGTGGGAATGTGAATGCCTCTTCAATTGGCGGCTATTGCACATTTAATTAATTAATTTATCTTATGTATTATGGGTATCATGTCCACACATGTCTGTGCATCACATAAGCACCTGGTCCCCTTGGAGGCCCCGGAGTCACAGACAACTGTGAACTGCCATATTGTGCACGGCCATATGGAGGCTGGGAGTTGAACTCTTCCTCTGGAAGGGCAGCCAGTGCTCTCAATCGCTGAGCCGTCTCTCTACCCACTGAGCATACGTCCTAACAGGATCCAGTGGGCTGTCTCACAGGTGCACACGTGGAATCTGGTCAGATCCACCTCTGTCTCACTCTTCTCTCCTCTCTCTTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCTCCTCTCCCCTCTCCCCTCTCCCCTCTCCCCTCTTCCCTCTCCCCTCTCTCCTCTCTCTCCTCTCTCTCCTCTCTCTCCTCTCTCCTCTTTCCTCTCTCTTCTCTCTTCTCTCTTCTTTCTCTCTTCTCTCTCTCTCTCTGCCATGACCGTGAGCGAGACAGCGGCATCTCTTTGATGGCACACTCACTCCCCTGTCAGAGCCTCTGCTGGCGTTCCGACTTGTACAGCTTCCCAACTGCGATTCTGTACATGTTGTAGCTTTAATTTTTGTTTTGATATAAACCTTGACATCCTGCATTTTTATAAGCTTCATTTTGGATTTTTGTTTTCTATTAAAGCTTCAAAAAAAAAGAAAATTCCAGAAATATCTTTGATATTTTATATAGATTTTTATAATTCATTTTTATAAAAGTACTCTATGAAAGAGGCGTATACCTTATAATATTTTATACTTCATAGTGCATCATACTTGAATGAAAAACACTTTTTCGAGACAGGTTCTTTTTATGTAGCCATGACTAACCTGGAACTCATTGTGTAGACCAGCTTAGCATCGACATCACAGAAGTCCACAGTCTCTGGTCCCGAAGGCTGGAATTAAAGGCATGTGCCACCACGACTGGCTAGAATTTTGAATTTAAAAAAAATTTTAGCTGGGGATGTACCTCAGTAGTAGGCATTTGCCTGGGTTCAATCCCTGTTTAATCTCCCACCCTCTGGTCCCTCCAG
Seq C2 exon
GATGTCGTCCTGATGCGGGCGCTGCGGGACATGAACCTGCCCAAGTTTGTGTTTGAGGACGTCCCCCTCTTCCTGGGCCTCATCTCTGACCTGTTTCCCGGGCTGGACTGCCCCCGTGTGCGCTACCCGGATTTCAACGACGCAGTGGAGCAGGTGTTGGAGGAAAATGGTTATGTGCTCCTGCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(19.0=89.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCCAAGAAGATGACAGT
R:
GACTGGCAGGAGCACATAACC
Band lengths:
334-1747
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: