MmuEX6021073 @ mm9
Exon Skipping
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125259454-125264389:+
Coord C1 exon
chr5:125259454-125259642
Coord A exon
chr5:125262638-125262784
Coord C2 exon
chr5:125264198-125264389
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTGCCTTTGGTTAAAAAGACG
3' ss Score
1.29
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
TTCGAAGGGCAGGAGATCTCCCTTGACTCTCGGATGGGCATCTTCATCACCATGAACCCGGGCTATGCGGGCCGCACGGAGCTGCCTGAGTCTGTGAAGGCGCTGTTCAGGCCTGTGGTTGTCATTGTGCCCGACCTGCAGCAGATCTGTGAGATCATGCTTTTCTCTGAGGGCTTCCTGGGCGCCAAG
Seq A exon
ACGCTGGCCAAGAAGATGACAGTTCTCTATAAGCTGGCCCGGGAGCAGCTGTCGAAACAGCACCACTATGACTTTGGGCTCCGGGCCCTGAAGTCAGTGCTGGTCATGGCTGGTGAGCTGAAGAGAGGCTCCGCAGACCTGCAGGAG
Seq C2 exon
GATGTCGTCCTGATGCGGGCGCTGCGGGACATGAACCTGCCCAAGTTTGTGTTTGAGGACGTCCCCCTCTTCCTGGGCCTCATCTCTGACCTGTTTCCCGGGCTGGACTGCCCCCGTGTGCGCTACCCGGATTTCAACGACGCAGTGGAGCAGGTGTTGGAGGAAAATGGTTATGTGCTCCTGCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(26.8=100)
A:
PF127742=AAA_6=PD(19.0=89.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTCGGATGGGCATCTTCA
R:
CAGAGATGAGGCCCAGGAAGA
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: