DreEX0003665 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21081281-21111247:+
Coord C1 exon
chr7:21081281-21081472
Coord A exon
chr7:21091623-21091780
Coord C2 exon
chr7:21111160-21111247
Length
158 bp
Sequences
Splice sites
3' ss Seq
AATTTTTTTTTTTTTTGCAGATA
3' ss Score
11.09
5' ss Seq
CAAGTACTG
5' ss Score
0.23
Exon sequences
Seq C1 exon
GAAAGCTCTTTGCAGGCTCAGTCAAACGTCACTTTCCTGTCCCTGTTGAAAGAGCCGTGTGAGGAGCTTGCTCAGCTTAAACCTTGTGAGATTGCACCCAAACTCGCTCACATCCTCAACCTCATTCGTGTGATATGGGTCAACTCCAGCTACTTCAACACCCGTGACAGGATCACAGCTCTGTTACGCAAG
Seq A exon
ATAAGCAATGAGATCATCCGTCTGTGCTGTCGAGAGATCTCGCTGAACAGGATCTTCCAGGGTTACGCGGTCTCTAGCAAACAGATTCTGAATGACTGTATTCAGTGCTGCCTGGCCTGGAAAGAGCTGTACCTGCACACCTCACAGCTCCACCACAA
Seq C2 exon
GCATTCTTCCCAAGGGTGGTCGCTTGACCAGATTAGCATATTTGCTCTGGTGGATTCCTTTATGCAGAGATGCAAAGATCTAATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'6-7,'6-6,7-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.0=100)
A:
PF083857=DHC_N1=FE(9.1=100)
C2:
PF083857=DHC_N1=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGGCTCAGTCAAACGT
R:
GCATAAAGGAATCCACCAGAGCA
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]