MmuEX0014990 @ mm9
Exon Skipping
Gene
ENSMUSG00000005237 | Dnahc2
Description
dynein, axonemal, heavy chain 2 [Source:MGI Symbol;Acc:MGI:107731]
Coordinates
chr11:69330519-69331969:-
Coord C1 exon
chr11:69331778-69331969
Coord A exon
chr11:69331073-69331230
Coord C2 exon
chr11:69330519-69330606
Length
158 bp
Sequences
Splice sites
3' ss Seq
GGACGTTGCTCTCTCTGCAGATG
3' ss Score
9.4
5' ss Seq
CCAGTAGGA
5' ss Score
1.81
Exon sequences
Seq C1 exon
GATGGCTCTCGACAAGCTCAGTCCAACCTGACTTTCTTGTCCATCCTGAGGGAACCCTACCAGGAGTTGGCCTTCATGAAGCCTAAGGACATCTCTGAGAAGCTCCCGAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCCCCCCACTACAACACTCGGGAAAGGCTGACGGCGCTGTTCCGGAAG
Seq A exon
ATGAGCAACGAGATCATCCGTTTATGCTGTCACTCCATCTCTTTGGACCGAATCTTTGAGGGCTATGTCAATTCTAGCAAGGAGGACCTGGAAGGCTGCATTTCCTGTTGTCAGGCTTGGAAAGAGCACTACCTGCGTGCCGTACAGATGCACACCCA
Seq C2 exon
GTTCTCCAATCGGGGCTGGGTTCTGGACCAGACGAGCATATTTGCTCAAGTAGATGCCTTTGTGCAGCGCTGCAAAGACCTTATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000005237-'9-9,'9-8,10-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=PD(7.6=18.5),PF083857=DHC_N1=PU(14.8=75.4)
A:
PF083857=DHC_N1=FE(22.7=100)
C2:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGACAAGCTCAGTCCAACC
R:
CGCTGCACAAAGGCATCTACT
Band lengths:
254-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: