RnoEX0028529 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56121285-56122725:-
Coord C1 exon
chr10:56122534-56122725
Coord A exon
chr10:56121794-56121951
Coord C2 exon
chr10:56121285-56121372
Length
158 bp
Sequences
Splice sites
3' ss Seq
GGCAGTTGCTCCCTCTGCAGATG
3' ss Score
6.93
5' ss Seq
CCAGTAGGA
5' ss Score
1.81
Exon sequences
Seq C1 exon
GATGGCTCTCGGCAAGCTCAGTCCAACCTGACTTTCTTGTCAATTCTGAGGGAACCCTACCAGGAGCTGGCCTTCATGAAACCTAAGGACATCTCCGACAAACTCCCTAAGCTGATCAGCCTCATCCGAATCATCTGGGTCAACTCTCCCCACTACAACACTCGGGAAAGGTTGACTGGCCTGTTCCGGAAG
Seq A exon
ATGAGCAACGAGATTATCCGTCTATGCTGTCACTCCGTCTCTTTGGACCGAATCTTTGAGGGCTATGTCTCTTCCAGCAAGGAAGACCTGCAAGGCTGCATTTCCTGTTGCCACGCCTGGAAAGAGCACTACCTGCGCGCCGTACAGATGCATACCCA
Seq C2 exon
GTTCTCCAACCGGGGCTGGGTTCTAGACCAGACGAGCATATTTGCTCAAGTAGACGCCTTTGTGCAGCGCTGCAAAGATCTTATTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688_CASSETTE8
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(11.0=100)
A:
PF083857=DHC_N1=FE(9.1=100)
C2:
PF083857=DHC_N1=FE(5.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCTCAGTCCAACCTGAC
R:
GCTGCACAAAGGCGTCTACTT
Band lengths:
249-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]