DreEX0003741 @ danRer10
Exon Skipping
Gene
ENSDARG00000073731 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:HGNC:19868]
Coordinates
chr7:28709331-28715745:+
Coord C1 exon
chr7:28709331-28709445
Coord A exon
chr7:28713419-28713538
Coord C2 exon
chr7:28715556-28715745
Length
120 bp
Sequences
Splice sites
3' ss Seq
GAATCTGCTTGTTCTCTCAGAGC
3' ss Score
7.76
5' ss Seq
CAGGTATAC
5' ss Score
7.48
Exon sequences
Seq C1 exon
GTGACAGAGATTAGTAATGTGAAGAACGTCACAAGATTGCCTCGTGACACGAAGCGACAGGCCGTGGCCATCGTTTTTACAGACGACACCTCTCGAACCTTCACCTGCGAATCAG
Seq A exon
AGCTGGAGGCTGAGGAGTGGTTTAAGACCTTGTCTATCGAGTGCCTGGGGACGCGTCTGAATGACATTAGTCTTGGAGAGCCAGACCTCCTGGCCGCTGGAGTTCAGTGTGAACACACAG
Seq C2 exon
AGCGTTTTAATGTGTTCCTGTTGCCCTGCCCAAATCTGGACATCTACGGTGAGTGTATGATGCAGATCACACATGAAAACATCTACCTGTGGGACATTCACAACCCTCGCACCAAGCTGGTAACCTGGCCGCTTTGTTCGCTACGCCGATACGGACGAGACGCTACACGCTTCACCTTCGAGGCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000073731_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.5=100)
A:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
C2:
PF0217412=IRS=FE(64.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCACAAGATTGCCTCGTGA
R:
GTGTAGCGTCTCGTCCGTATC
Band lengths:
257-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]