GgaEX1020768 @ galGal3
Exon Skipping
Gene
ENSGALG00000001160 | DOK4
Description
NA
Coordinates
chr11:549150-549784:+
Coord C1 exon
chr11:549150-549267
Coord A exon
chr11:549341-549460
Coord C2 exon
chr11:549595-549784
Length
120 bp
Sequences
Splice sites
3' ss Seq
CCACGCTGTGTGCCTTGCAGAGC
3' ss Score
9.73
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
CAGGTGACCGAGATCAGCAACGTCAAGTGCATCACGCGGCTGCCCAAGGAGACCAAGAGGCAGGCGGTGGCCATCGTCTTCGCCGACGACTCCGCGCGTACCTTCACCTGCGATTCGG
Seq A exon
AGCTGGAGGCCGAGGAGTGGTACAAGGCGCTGTCGGTGGAGTGCTTGGGTGCCCGACTCAACGACATCAGCCTGGGGGAGCCCGACCTGCTGGCGGCCGGCGTGCAGTGCGAGCAGACGG
Seq C2 exon
ACCGGTTCAACGTGTTCCTCCTCCCCTGCCCCAACCTGGACGTGTACGGCGAGTGCAAGCTGCAGATCACCCACGAAAACATCTACCTCTGGGACACGCACAACCCGCGCCTCAAGCTGCTCTCCTGGCCCCTCTGCTCTCTGCGCCGCTACGGCCGCGACGCCACGCGCTTCACCTTCGAGGCGGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001160-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0217412=IRS=PU(2.0=4.9)
C2:
PF0217412=IRS=FE(64.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGACCGAGATCAGCAAC
R:
CAGGAGAGCAGCTTGAGGC
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]