HsaEX0020689 @ hg19
Exon Skipping
Gene
ENSG00000125170 | DOK4
Description
docking protein 4 [Source:HGNC Symbol;Acc:19868]
Coordinates
chr16:57508705-57509532:-
Coord C1 exon
chr16:57509418-57509532
Coord A exon
chr16:57509012-57509131
Coord C2 exon
chr16:57508705-57508894
Length
120 bp
Sequences
Splice sites
3' ss Seq
TGAAGTAGCATTTTCTTCAGAGC
3' ss Score
0.57
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGACTGAGATCAGCAACGTCAAGTGTGTTACGCGGCTCCCCAAGGAGACCAAGCGGCAGGCGGTGGCCATCATATTCACTGATGACTCGGCACGTACCTTCACCTGCGACTCAG
Seq A exon
AGCTAGAGGCAGAGGAGTGGTACAAGACACTATCTGTGGAGTGTCTGGGGTCCCGCCTCAACGACATCAGTCTGGGAGAACCTGACCTCCTGGCCCCAGGGGTGCAGTGTGAACAGACAG
Seq C2 exon
ATCGCTTCAATGTCTTCCTGCTGCCCTGCCCCAACCTGGACGTGTATGGCGAGTGCAAGCTGCAGATCACCCACGAGAACATCTACCTCTGGGACATCCACAACCCCCGTGTGAAGCTCGTCTCGTGGCCCCTCTGCTCACTGCGCCGCTATGGCCGGGATGCCACACGCTTTACCTTCGAGGCTGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125170_MULTIEX1-2/3=1-3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.5=100),PF065348=RGM_C=FE(48.1=100)
A:
PF0016924=PH=PD(13.5=34.1),PF065348=RGM_C=PD(15.2=29.3),PF0217412=IRS=PU(2.0=4.9)
C2:
PF0217412=IRS=FE(64.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGGCCATCATATTCACT
R:
CCAGCCTCGAAGGTAAAGCG
Band lengths:
242-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)