MmuEX6037539 @ mm10
Exon Skipping
Gene
ENSMUSG00000040631 | Dok4
Description
docking protein 4 [Source:MGI Symbol;Acc:MGI:2148865]
Coordinates
chr8:94866457-94867242:-
Coord C1 exon
chr8:94867128-94867242
Coord A exon
chr8:94866748-94866867
Coord C2 exon
chr8:94866457-94866646
Length
120 bp
Sequences
Splice sites
3' ss Seq
GAAGTGCTATTTTTTTCTAGAGC
3' ss Score
6.3
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGACTGAGATTAGCAACGTCAAGTGTGTCACACGGCTCCCCAAGGAGACCAAGAGGCAGGCGGTGGCCATCATATTCACAGACGACTCCGCTCGCACCTTCACTTGTGACTCAG
Seq A exon
AGCTGGAGGCAGAAGAGTGGTACAAGACACTGTCCGTGGAATGTCTGGGATCACGGCTCAATGACATCAGCCTGGGAGAGCCTGACCTCCTGGCTCCAGGAGTACAGTGTGAGCAGACAG
Seq C2 exon
ATCGCTTCAACGTCTTCCTGTTACCCTGCCCCAACCTGGACGTGTATGGGGAGTGCAAGCTGCAGATCACTCACGAGAACATCTACCTCTGGGACATACACAACCCCCGCGTGAAGCTCGTCTCGTGGCCCCTCTGCTCTTTGCGCCGTTATGGCCGAGATGCTACGCGCTTTACCTTTGAGGCGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040631-'14-13,'14-9,16-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(36.5=100)
A:
PF0016924=PH=PD(13.5=34.1),PF0217412=IRS=PU(2.0=4.9)
C2:
PF0217412=IRS=FE(64.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGTGGCCATCATATTCACA
R:
CTGCCCGCCTCAAAGGTAAAG
Band lengths:
245-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types