DreEX0007257 @ danRer10
Exon Skipping
Gene
ENSDARG00000098967 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr10:8797229-8803578:-
Coord C1 exon
chr10:8803476-8803578
Coord A exon
chr10:8800447-8800616
Coord C2 exon
chr10:8797229-8797397
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTGTGATTTGTGTCACACAGATA
3' ss Score
7.22
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GAGTCAATGGGCAAAAGCTCTGATGGGAAATCTTACATCATCACAGGGAGCTGGAATCCCAACACTCCTCAGTTTCAAGCTGTGAATGAGGAGACGCCCAAAG
Seq A exon
ATAAGTTCATGTACATGACAACGGCGGTTGACTTGGTGATCACTGAGGTCGAGGAGCCTGTGAGGTTCCTGCTAGAGACACGGGTTCGAGTGTGTTCACCCAACGAGAGGCTGTTCTGGCCCTTCAGCAAACGCAGTTACACAGAGACCTTCTATCTCAAACTCAGACAG
Seq C2 exon
ATGGAGAACAAGGAGAGGAAGAGTAACTCGGATACGCTGTATGAAGTGATGAGTTTAGAGAGCGAGACAGAAAGAGAAAGAAGGAAGACCACAGCGAGCCCCGGCGTACTGTCTTCTGGGTCCCATGGCTCCACGGTGCCATCTCCACCTGAGGATGATGAGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098967-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.286 A=0.000 C2=0.930
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(25.6=100)
A:
PF124733=DUF3694=PD(27.1=63.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAAAAGCTCTGATGGGAA
R:
CCTCATCATCCTCAGGTGGAG
Band lengths:
258-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]