HsaEX0051777 @ hg19
Exon Skipping
Gene
ENSG00000011454 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:17155]
Coordinates
chr9:125759538-125772807:+
Coord C1 exon
chr9:125759538-125759640
Coord A exon
chr9:125760876-125761045
Coord C2 exon
chr9:125772633-125772807
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTTTCTTTGTTTAGATA
3' ss Score
10.24
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GAATCTATGGGCAAAAGTTCAGATGGAAAGTCGTATGTTATTACGGGGAGCTGGAATCCAAAATCCCCACATTTTCAAGTTGTAAATGAAGAAACTCCTAAAG
Seq A exon
ATAAAGTCCTGTTTATGACCACAGCTGTAGATTTGGTAATAACAGAAGTACAGGAGCCTGTTCGATTTCTCCTGGAGACAAAAGTCCGCGTTTGCTCACCTAATGAAAGATTATTCTGGCCCTTCAGCAAACGTAGTACTACTGAAAATTTCTTTTTGAAACTAAAACAG
Seq C2 exon
ATAAAGCAAAGGGAGAGAAAGAATAATACTGACACTTTATATGAAGTTGTATGCTTGGAAAGTGAATCAGAAAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCCTGCCACAGTCTGGATCGCAAAGTTCAGTGATACCTTCTCCTCCAGAAGATGATGAAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000011454-'26-29,'26-27,28-29
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.110 A=0.000 C2=0.575
Domain overlap (PFAM):
C1:
PF124733=DUF3694=PD(27.6=92.3)
A:
PF124733=DUF3694=PD(27.1=63.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTATGTTATTACGGGGAGCTGG
R:
TCCTCTTCATCATCTTCTGGAGGA
Band lengths:
245-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)