GgaEX1047821 @ galGal4
Exon Skipping
Gene
ENSGALG00000001225 | RABGAP1
Description
RAB GTPase activating protein 1 [Source:HGNC Symbol;Acc:HGNC:17155]
Coordinates
chr17:8835076-8837871:+
Coord C1 exon
chr17:8835076-8835178
Coord A exon
chr17:8835671-8835840
Coord C2 exon
chr17:8837697-8837871
Length
170 bp
Sequences
Splice sites
3' ss Seq
GCTTTGGGATTTCTCTCTAGATA
3' ss Score
7.35
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GAGTCGATGGGTAAAAGTTCTGATGGAAAATCATACGTGATCACTGGTAGCTGGAATCAAAAATCTCCACACTTCCAATTTGTAAATGAAGAAACACCAAAAG
Seq A exon
ATAAAGTACTGTTCATGACTACTGCTGTGGATTTGGTGATAACTGAGGTTCAGGAACCTGTTCGATTCATCTTGGAGACTAAAGTGAGAGTTTGTTCACCTAATGAGAGGTTGTTCTGGCCCTTCAGCAAACGTAGCTCCACTGAAAATTTTTTCCTGAAATTAAAACAG
Seq C2 exon
ATAAAGCAAAAGGACAGAAAGAATAACTCAGACACATTATATGAAGTTGTGTGTCTAGAAAGTGAATCAGAGAGGGAGAGAAGAAAAACCACAGCGAGCCCCTCTCTTCGCCTGCCCCAGTCAGGGTCACAGGGCTCAATGATTCCTTCCCCTCCAGAGGATGATGAAGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001225-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.576
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(25.6=100)
A:
PF124733=DUF3694=PD(27.1=63.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGATCACTGGTAGCTGGA
R:
TCCTCTTCATCATCCTCTGGAG
Band lengths:
242-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]