RnoEX0073391 @ rn6
Exon Skipping
Gene
ENSRNOG00000009402 | Rabgap1
Description
RAB GTPase activating protein 1 [Source:RGD Symbol;Acc:1304691]
Coordinates
chr3:21734884-21745565:+
Coord C1 exon
chr3:21734884-21734986
Coord A exon
chr3:21736760-21736929
Coord C2 exon
chr3:21745391-21745565
Length
170 bp
Sequences
Splice sites
3' ss Seq
TCTCGTTTCTCCCTCTCTAGATA
3' ss Score
10.89
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
GAGTCTATGGGCAAAAGTTCAGATGGAAAGTCATATGTTATTACTGGAAGCTGGAATCCGAAGTCCCCACATTTTCAAGTTGTGAATGAAGAAACTCCTAAAG
Seq A exon
ATAAAGTGCTGTTCATGACAACAGCTGTGGATTTGGTGATAACAGAAGTACAGGAACCTGTTCGATTTCTTCTAGAGACAAAAGTTCGAGTATGCTCACCTAATGAAAGGTTATTCTGGCCCTTCAGCAAACGGAGCACTACTGAGAACTTCTTTCTGAAACTGAAGCAG
Seq C2 exon
ATAAAGCAGAAGGAGAAGAAGAATAATGCTGACACTTTATATGAAGTTGTGTGTTTGGAAAGTGAGTCAGAGAGAGAGAGGAGGAAAACTACAGCCAGTCCTTCAGTTCGCCTGCCACAGTCTGGATCCCAGAGCTCCATGATCCCCTCTCCTCCAGAAGACGATGAAGAAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009402-'23-26,'23-20,24-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.114 A=0.000 C2=0.576
Domain overlap (PFAM):
C1:
PF124733=DUF3694=FE(25.6=100)
A:
PF124733=DUF3694=PD(27.1=63.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAAAAGTTCAGATGGAA
R:
CTGGAGGAGAGGGGATCATGG
Band lengths:
253-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]