DreEX0009876 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51975797-51977070:+
Coord C1 exon
chr1:51975797-51975921
Coord A exon
chr1:51976017-51976115
Coord C2 exon
chr1:51976881-51977070
Length
99 bp
Sequences
Splice sites
3' ss Seq
ATGATGGTTTGTGTCTCCAGTAA
3' ss Score
5.67
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
ATTGTGCTTCCCGCTGTGTTCGTGTGCATCGCTCTGGTCTTCAGCCTCATCGTTCCTCCTTTCGGGAAATATCCCAGCCTCGCTCTGGAGCCCAGCATGTATGAGGAGCAGTTCACCTTTATCAG
Seq A exon
TAATGACGCACCAGAAGACAGACACACAAACAGGCTGCTTGATGCTCTGAAGGACAGTCCGGCTTATACTGACCAGTGCACAGATGGGAAAAACACAGC
Seq C2 exon
TAGCAGATCGTGTCCGATTAAAGATGGAGAATGGCTGGTTCCAGAGGTTACCGAGAGCATTGAGGCAATATTCCTGAATGGAAACTGGAGTATGGAAAACCCTTCTCCTCTGTGTGAGTGCAGCTGTGAAGGACGGAAAAAGATGCTTCCGGAGTGTCCGCCTGGAGCAGGAGGCCTTCCACCGCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'31-31,'31-30,32-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.147 C2=0.219
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATCGCTCTGGTCTTCAG
R:
GCCTCAATGCTCTCGGTAACC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]