RnoEX6021848 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69885029-69889914:-
Coord C1 exon
chr5:69889790-69889914
Coord A exon
chr5:69888616-69888714
Coord C2 exon
chr5:69885029-69885218
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGTCTCCCATGTGACTGCAGTAA
3' ss Score
4.89
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATTGTCCTGCCGGCTGTCTTTGTTTGCATCGCCCTGGTCTTCAGCCTGATCGTGCCACCCTTTGGCAAGTACCCCAACCTGGAACTTCAACCCTGGATGTATAACGAGCAGTATACATTTGTCAG
Seq A exon
TAACGATGCTCCAGAGGACATGGGCACCCAGGAACTCCTCAATGCTCTAACCAAAGATCCAGGCTTCGGGACCCGTTGTATGGAAGGAAACCCAATCCC
Seq C2 exon
AAACACTCCTTGCTTGGTCGGGGAGGAGGACTGGACCACTGGCCCAGTTCCCCAGACCCTCATGGACCTCTTCCAAAATGGGAACTGGACGATGAAGAACCCCTCACCTTCGTGCCAGTGTAGCAGTGACAAAATCAAGAAGATGCTGCCTGTGTGTCCTCCAGGGGCAGGGGGGCTGCCGCCTCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'41-40,'41-39,42-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.206 C2=0.219
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.8=100)
A:
PF126982=ABC2_membrane_3=FE(6.3=100)
C2:
PF126982=ABC2_membrane_3=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACCTGGAACTTCAACC
R:
ACGAAGGTGAGGGGTTCTTCA
Band lengths:
167-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]