GgaEX6050610 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54561681-54563590:-
Coord C1 exon
chrZ:54563466-54563590
Coord A exon
chrZ:54562954-54563052
Coord C2 exon
chrZ:54561681-54561867
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTCCTCTGCTATACCCATAGTAA
3' ss Score
6.03
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
ATTGTGCTGCCAGCTGTCTTTGTGTGTATTGCTCTCATGTTCAGTCTGATTGTTCCTCCCTTTGGGAAGTATCCCAGCCTGGAATTACAGCCCTGGATGTACGATGAGCAGTATACATTTATTAG
Seq A exon
TAATGATGCTCCAGAAGATGCAGGCACTCAGAAGCTTTTGGATGCCCTTCTCAATAAACCTGGCTTTGGAACACGCTGTATGCAGGGACACTCCATCCC
Seq C2 exon
AGACACTCCTTGCACCGTGGGACAGAAGGAATGGACCACTGCTTCAGTCCCAGACTCAGTCCTGGAAATCTTGAGAGGCAACTGGAGCATGGAGAACCCTTCTCCATCTTGTGAGTGCAGCAATGAGAAGATCAAGAAGATGCTGCCTGTGTGTCCCCCTGGTGCAGGCGGGCTGCCACCCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'42-58,'42-57,43-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.059 C2=0.206
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCTGGAATTACAGCCCTG
R:
TGCTGCACTCACAAGATGGAG
Band lengths:
173-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]