BtaEX6035690 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96295905-96300482:-
Coord C1 exon
chr8:96300358-96300482
Coord A exon
chr8:96298710-96298808
Coord C2 exon
chr8:96295905-96296094
Length
99 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTCATGTATCTACAGTAA
3' ss Score
6.88
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ATTGTCCTGCCAGCTGTGTTTGTCTGCATCGCCCTGGTGTTCAGCTTGATTGTGCCACCCTTTGGCAAGTACCCCAGCCTGGAGCTTCAGCCCTGGATGTACAATGAACAGTACACATTTGTCAG
Seq A exon
TAATGATGCGCCTGAGGATGTGAGCACCCAGGAACTCTTAAACGCTCTCACCGGAAAGCCTGGCTTTGGGACCCGATGTATGGAAGGAAACCCGATCCC
Seq C2 exon
AGAAACGCCCTGCTTGGTGGGAGAGGAGAAGTGGAACACTGCCCCAGTCCCCCAGACCATCACGGACCTCTTCCGAAATGGAAACTGGACAATGGAGAACCCCTCCCCCACCTGCCAGTGTAGCAGCGACAAAATCAAGAAGATGCTGCCTGTGTGCCCCCTGGGGGCAGGGGGGCTGCCTCCGCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'37-39,'37-38,38-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.088 C2=0.172
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(7.8=100)
A:
PF126982=ABC2_membrane_3=FE(6.3=100)
C2:
PF126982=ABC2_membrane_3=FE(12.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGTGTTCAGCTTGATT
R:
GGAAGAGGTCCGTGATGGTCT
Band lengths:
169-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]